Thanks for sharing the data.
Based on your data, your two D800E bodies seemed to have a similar AF Fine Tune difference for most lenses. Am I understanding you that the difference is attributed to the body? And if you wanted, could be adjusted in one of the other bodies?
It also looks like the teleconverter creates some issues. The AF Fine Tuning was maxed out with the 70-200 and teleconverter. That seems to indicate a problem mating the two or some other issue.
Were the quality of focus measurements similar as well? I was thinking that its possible that one body is simply sharper - and because it can resolve more detail, it might require more adjustment but still be sharper at all measures.